ClickHouse

ClickHouse MCP Server

An MCP server for ClickHouse.

Features

ClickHouse Tools

• run_select_query

  • Execute SQL queries on your ClickHouse cluster.
  • Input: sql (string): The SQL query to execute.
  • All ClickHouse queries are run with readonly = 1 to ensure they are safe.

• list_databases

  • List all databases on your ClickHouse cluster.

• list_tables

  • List tables in a database with pagination.
  • Required input: database (string).
  • Optional inputs:
    • like / not_like (string): Apply LIKE or NOT LIKE filters to table names.
    • page_token (string): Token returned by a previous call for fetching the next page.
    • page_size (int, default 50): Number of tables returned per page.
    • include_detailed_columns (bool, default true): When false, omits column metadata for lighter responses while keeping the full create_table_query.
  • Response shape:
    • tables: Array of table objects for the current page.
    • next_page_token: Pass this value back to fetch the next page, or null when there are no more tables.
    • total_tables: Total count of tables that match the supplied filters.

chDB Tools

• run_chdb_select_query
  • Execute SQL queries using chDB's embedded ClickHouse engine.
  • Input: sql (string): The SQL query to execute.
  • Query data directly from various sources (files, URLs, databases) without ETL processes.

Health Check Endpoint

When running with HTTP or SSE transport, a health check endpoint is available at /health. This endpoint:

• Returns 200 OK with the ClickHouse version if the server is healthy and can connect to ClickHouse
• Returns 503 Service Unavailable if the server cannot connect to ClickHouse

Example:

curl http://localhost:8000/health
# Response: OK - Connected to ClickHouse 24.3.1

Configuration

This MCP server supports both ClickHouse and chDB. You can enable either or both depending on your needs.

1. Open the Claude Desktop configuration file located at:

   • On macOS: ~/Library/Application Support/Claude/claude_desktop_config.json
   • On Windows: %APPDATA%/Claude/claude_desktop_config.json

2. Add the following:

{
  "mcpServers": {
    "mcp-clickhouse": {
      "command": "uv",
      "args": [
        "run",
        "--with",
        "mcp-clickhouse",
        "--python",
        "3.10",
        "mcp-clickhouse"
      ],
      "env": {
        "CLICKHOUSE_HOST": "<clickhouse-host>",
        "CLICKHOUSE_PORT": "<clickhouse-port>",
        "CLICKHOUSE_USER": "<clickhouse-user>",
        "CLICKHOUSE_PASSWORD": "<clickhouse-password>",
        "CLICKHOUSE_ROLE": "<clickhouse-role>",
        "CLICKHOUSE_SECURE": "true",
        "CLICKHOUSE_VERIFY": "true",
        "CLICKHOUSE_CONNECT_TIMEOUT": "30",
        "CLICKHOUSE_SEND_RECEIVE_TIMEOUT": "30"
      }
    }
  }
}

Update the environment variables to point to your own ClickHouse service.

Or, if you'd like to try it out with the ClickHouse SQL Playground, you can use the following config:

{
  "mcpServers": {
    "mcp-clickhouse": {
      "command": "uv",
      "args": [
        "run",
        "--with",
        "mcp-clickhouse",
        "--python",
        "3.10",
        "mcp-clickhouse"
      ],
      "env": {
        "CLICKHOUSE_HOST": "sql-clickhouse.clickhouse.com",
        "CLICKHOUSE_PORT": "8443",
        "CLICKHOUSE_USER": "demo",
        "CLICKHOUSE_PASSWORD": "",
        "CLICKHOUSE_SECURE": "true",
        "CLICKHOUSE_VERIFY": "true",
        "CLICKHOUSE_CONNECT_TIMEOUT": "30",
        "CLICKHOUSE_SEND_RECEIVE_TIMEOUT": "30"
      }
    }
  }
}

For chDB (embedded ClickHouse engine), add the following configuration:

{
  "mcpServers": {
    "mcp-clickhouse": {
      "command": "uv",
      "args": [
        "run",
        "--with",
        "mcp-clickhouse",
        "--python",
        "3.10",
        "mcp-clickhouse"
      ],
      "env": {
        "CHDB_ENABLED": "true",
        "CLICKHOUSE_ENABLED": "false",
        "CHDB_DATA_PATH": "/path/to/chdb/data"
      }
    }
  }
}

You can also enable both ClickHouse and chDB simultaneously:

{
  "mcpServers": {
    "mcp-clickhouse": {
      "command": "uv",
      "args": [
        "run",
        "--with",
        "mcp-clickhouse",
        "--python",
        "3.10",
        "mcp-clickhouse"
      ],
      "env": {
        "CLICKHOUSE_HOST": "<clickhouse-host>",
        "CLICKHOUSE_PORT": "<clickhouse-port>",
        "CLICKHOUSE_USER": "<clickhouse-user>",
        "CLICKHOUSE_PASSWORD": "<clickhouse-password>",
        "CLICKHOUSE_SECURE": "true",
        "CLICKHOUSE_VERIFY": "true",
        "CLICKHOUSE_CONNECT_TIMEOUT": "30",
        "CLICKHOUSE_SEND_RECEIVE_TIMEOUT": "30",
        "CHDB_ENABLED": "true",
        "CHDB_DATA_PATH": "/path/to/chdb/data"
      }
    }
  }
}

3. Locate the command entry for uv and replace it with the absolute path to the uv executable. This ensures that the correct version of uv is used when starting the server. On a mac, you can find this path using which uv.

4. Restart Claude Desktop to apply the changes.

Running Without uv (Using System Python)

If you prefer to use the system Python installation instead of uv, you can install the package from PyPI and run it directly:

1. Install the package using pip:

   python3 -m pip install mcp-clickhouse
   

   To upgrade to the latest version:

   python3 -m pip install --upgrade mcp-clickhouse
   

2. Update your Claude Desktop configuration to use Python directly:

{
  "mcpServers": {
    "mcp-clickhouse": {
      "command": "python3",
      "args": [
        "-m",
        "mcp_clickhouse.main"
      ],
      "env": {
        "CLICKHOUSE_HOST": "<clickhouse-host>",
        "CLICKHOUSE_PORT": "<clickhouse-port>",
        "CLICKHOUSE_USER": "<clickhouse-user>",
        "CLICKHOUSE_PASSWORD": "<clickhouse-password>",
        "CLICKHOUSE_SECURE": "true",
        "CLICKHOUSE_VERIFY": "true",
        "CLICKHOUSE_CONNECT_TIMEOUT": "30",
        "CLICKHOUSE_SEND_RECEIVE_TIMEOUT": "30"
      }
    }
  }
}

Alternatively, you can use the installed script directly:

{
  "mcpServers": {
    "mcp-clickhouse": {
      "command": "mcp-clickhouse",
      "env": {
        "CLICKHOUSE_HOST": "<clickhouse-host>",
        "CLICKHOUSE_PORT": "<clickhouse-port>",
        "CLICKHOUSE_USER": "<clickhouse-user>",
        "CLICKHOUSE_PASSWORD": "<clickhouse-password>",
        "CLICKHOUSE_SECURE": "true",
        "CLICKHOUSE_VERIFY": "true",
        "CLICKHOUSE_CONNECT_TIMEOUT": "30",
        "CLICKHOUSE_SEND_RECEIVE_TIMEOUT": "30"
      }
    }
  }
}

Note: Make sure to use the full path to the Python executable or the mcp-clickhouse script if they are not in your system PATH. You can find the paths using:

• which python3 for the Python executable
• which mcp-clickhouse for the installed script

Development

1. In test-services directory run docker compose up -d to start the ClickHouse cluster.

2. Add the following variables to a .env file in the root of the repository.

Note: The use of the default user in this context is intended solely for local development purposes.

CLICKHOUSE_HOST=localhost
CLICKHOUSE_PORT=8123
CLICKHOUSE_USER=default
CLICKHOUSE_PASSWORD=clickhouse

3. Run uv sync to install the dependencies. To install uv follow the instructions here. Then do source .venv/bin/activate.

4. For easy testing with the MCP Inspector, run fastmcp dev mcp_clickhouse/mcp_server.py to start the MCP server.

5. To test with HTTP transport and the health check endpoint:

   # Using default port 8000
   CLICKHOUSE_MCP_SERVER_TRANSPORT=http python -m mcp_clickhouse.main
   
   # Or with a custom port
   CLICKHOUSE_MCP_SERVER_TRANSPORT=http CLICKHOUSE_MCP_BIND_PORT=4200 python -m mcp_clickhouse.main
   
   # Then in another terminal:
   curl http://localhost:8000/health  # or http://localhost:4200/health for custom port
   

Environment Variables

The following environment variables are used to configure the ClickHouse and chDB connections:

ClickHouse Variables

Required Variables

• CLICKHOUSE_HOST: The hostname of your ClickHouse server
• CLICKHOUSE_USER: The username for authentication
• CLICKHOUSE_PASSWORD: The password for authentication

[!CAUTION] It is important to treat your MCP database user as you would any external client connecting to your database, granting only the minimum necessary privileges required for its operation. The use of default or administrative users should be strictly avoided at all times.

Optional Variables

• CLICKHOUSE_PORT: The port number of your ClickHouse server
  • Default: 8443 if HTTPS is enabled, 8123 if disabled
  • Usually doesn't need to be set unless using a non-standard port
• CLICKHOUSE_ROLE: The role to use for authentication
  • Default: None
  • Set this if your user requires a specific role
• CLICKHOUSE_SECURE: Enable/disable HTTPS connection
  • Default: "true"
  • Set to "false" for non-secure connections
• CLICKHOUSE_VERIFY: Enable/disable SSL certificate verification
  • Default: "true"
  • Set to "false" to disable certificate verification (not recommended for production)
  • TLS certificates: The package uses your operating system trust store for TLS certificate verification via truststore. We call truststore.inject_into_ssl() at startup to ensure proper certificate handling. Python’s default SSL behavior is used as a fallback only if an unexpected error occurs.
• `CLICKHOU

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